Assessment of genetic diversity within the Merodon ruficornis species group (Diptera: Syrphidae) by RAPD analysis

Authors

  • Andrijana Andrić University of Novi Sad, BioSensе Institute, Dr Zorana Đinđića 1, 21000 Novi Sad
  • Nataša Kočiš Tubić University of Novi Sad, Faculty of Sciences
  • Mihajla Đan University of Novi Sad, Faculty of Sciences
  • Ante Vujić University of Novi Sad, Faculty of Sciences
  • Dragana Obreht Vidaković University of Novi Sad, Faculty of Sciences

Keywords:

flower flies, genetic diversity, hoverflies, Merodon, RAPD

Abstract

As one of the most distinct groups in the hoverfly genus Merodon, the monophyletic ruficornis species group has been the focus of several studies using different approaches. Molecular methods have shown incongruences between morphological and molecular data. In the present study, we investigated four species of the Merodon ruficornis group (i.e. M. loewi, M. armipes, M. papillus and M. hoplitis) with the aim of detecting intra- and interspecific genetic diversity, and we examined the usefulness of random amplified polymorphic DNA (RAPD) in an integrative taxonomic approach to species delimitation. Analysis of Nei’s genetic variation over all loci showed that genetic diversity for the analyzed Merodon species was h=0.24. Based on UPGMA, PCoA and Bayesian clustering analyses, our results clearly differentiated four groups that correspond to the four morphologically-defined Merodon species. Among the analyzed species, M. armipes and M. hoplitis showed the lowest level of genetic divergence; M. loewi was clearly separated from both M. armipes and M. papillus. Based on our data, we propose the use of RAPD-PCR as an additional tool for resolving taxonomic problems within Merodon.

https://doi.org/10.2298/ABS160729131A

Received: July 29, 2016; Revised: November 15, 2016; Accepted: December 5, 2016; Published online: December 8, 2016

How to cite: Andrić A, Kočiš-Tubić N, Đan M, Vujić A, Obreht Vidaković D. Assessment of genetic diversity within the Merodon ruficornis species group (Diptera: Syrphidae) by RAPD analysis. Arch Biol Sci. 2017;69(3):553-60.

Downloads

Download data is not yet available.

Author Biographies

Nataša Kočiš Tubić, University of Novi Sad, Faculty of Sciences

Department of Biology and Ecology

Mihajla Đan, University of Novi Sad, Faculty of Sciences

Department of Biology and Ecology

Ante Vujić, University of Novi Sad, Faculty of Sciences

Department of Biology and Ecology

Dragana Obreht Vidaković, University of Novi Sad, Faculty of Sciences

Department of Biology and Ecology

References

Brown BV, Borkent A, Cumming JM, Wood DM, Woodley NE, Zumbado M. Manual of Central American Diptera, Volume 1. Ottawa: Canadian Science Publishing, NRC Research Press; 2009. 714 p.

Ståhls G, Vujić A, Pérez-Bañón C, Radenković S, Rojo S, Petanidou T. COI barcodes for identification of Merodon hoverflies (Diptera, Syrphidae) of Lesvos Island, Greece. Mol Ecol Resour. 2009;9(6):1431-8.

Vujić A, Marcos-García MÁ, Sarıbıyık S, Ricarte A. New data on the Merodon Meigen 1803 fauna (Diptera: Syrphidae) of Turkey including description of a new species and changes in the nomenclatural status of several taxa. Ann Soc Entomol Fr (NS). 2011;47(1-2):78-88.

Marcos-García MÁ, Vujić A, Mengual X. Revision of Iberian species of the genus Merodon (Diptera: Syrphidae). Eur J Entomol. 2007;104(3):531-72.

Francuski Lj, Ludoški J, Vujić A, Milankov V. Wing geometric morphometric inferences on species delimitation and intraspecific divergent units in the Merodon ruficornis group (Diptera, Syrphidae) from the Balkan Peninsula. Zool Sci. 2009;26(4):301-8.

Marcos-García MÁ, Vujić A, Ricarte A, Ståhls G. Towards an integrated taxonomy of the Merodon equestris species complex (Diptera: Syrphidae) including description of a new species, with additional data on Iberian Merodon. Can Entomol. 2011;143(4):332-48.

Mengual X, Ståhls G, Vujić A, Marcos-García MÁ. Integrative taxonomy of Iberian Merodon species (Diptera, Syrphidae). Zootaxa. 2006;1377:1-26.

Milankov V, Ståhls G, Vujić A. Molecular diversity of populations of the Merodon ruficornis group (Diptera, Syrphidae) on the Balkan Peninsula. J Zool Syst Evol Res. 2008a;46(2):143-52.

Milankov V, Ståhls G, Stamenković J, Vujić A. Genetic diversity of populations of Merodon aureus and M. cinereus species complexes (Diptera, Syrphidae): integrative taxonomy and implications for conservation priorities on the Balkan Peninsula. Conserv Genet. 2008b;9(5):1125-37.

Milankov V, Ludoški J, Ståhls G, Stamenković J, Vujić A. High molecular and phenotypic diversity in the Merodon avidus complex (Diptera, Syrphidae): cryptic speciation in a diverse insect taxon. Zool J Linn Soc - Lond. 2009;155(4):819-33.

Milankov V, Ludoški J, Francuski Lj, Ståhls G, Vujić A. Genetic and phenotypic diversity patterns in Merodon albifrons Meigen, 1822 (Diptera: Syrphidae): evidence of intraspecific spatial and temporal structuring. Biol J Linn Soc. 2013; 110(2):257-80.

Vujić A, Pérez-Bañón C, Radenković S, Ståhls G, Rojo S, Petanidou T, Šimić S. Two new species of the genus Merodon Meigen 1803 (Diptera: Syrphidae) from the island of Lesvos (Greece), in the eastern Mediterranean. Ann Soc Entomol Fr (NS). 2007;43(3):319-26.

Vujić A, Radenković S, Ståhls G, Ačanski J, Stefanović A, Veselić S, Andrić A, Hayat R. Systematics and taxonomy of the ruficornis group of genus Merodon Meigen (Diptera: Syrphidae). Syst Entomol. 2012;37(3):578-602.

Francuski Lj, Ludoški J, Vujić A, Milankov V. Phenotypic evidence for hidden biodiversity in the Merodon aureus group (Diptera, Syrphidae) on the Balkan Peninsula: conservation implication. J Insect Conserv. 2011;15(3):379-88.

Popović D, Djan M, Šašić Lj, Šnjegota D, Obreht D, Vujić A. Usage of different molecular markers in delimitation of cryptic taxa in Merodon avidus species complex (Diptera: Syrphidae). Acta Zool Bulg. 2014;Suppl7:33-8.

Popović D, Ačanski J, Djan M, Obreht D, Vujić A, Radenković S. Sibling species delimitation and nomenclature of the Merodon avidus complex (Diptera: Syrphidae). Eur J Entomol. 2015;112(4):790-809.

Milankov V, Vujić A, Šimić S. Identifying the species of the ruficornis group of the genus Merodon Meigen (Diptera: Syrphidae) using morphological and genetic markers. Stud Dipterol. 2002;9:319-26.

Welsh J, McClelland M. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 1990;18(24):7213-8.

Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 1990;18(22):6531-5.

Jain SK, Neekhra B, Pandey D, Jain K. RAPD marker system in insect study: A review. Indian J Biotechnol. 2010;9(1):7-12.

Ballinger-Crabtree ME, Black WC, Miller BR. Use of genetic polymorphisms detected by the random-amplified polymorphic DNA polymerase chain reaction (RAPD-PCR) for differentiation and identification of Aedes aegypti subspecies and populations. Am J Trop Med Hyg. 1992;47(6):893-901.

Wilkerson RC, Parsons TJ, Albright DG, Klein TA, Braun MJ. Random amplified polymorphic DNA (RAPD) markers readily distinguish cryptic mosquito species (Diptera: Culicidae: Anopheles). Insect Mol Biol. 1993;1(4):205-11.

Stevens J, Wall R. The use of random amplified polymorphic DNA (RAPD) analysis for studies of genetic variation in populations of the blowfly Lucilia sericata (Diptera: Calliphoridae) in southern England. Bull Entomol Res. 1995;85(4):549-55.

Çöl B, Tonguç A, Özgül O, Civelek HS, Kaya B. The use of RAPD-PCR analysis in characterization of Liriomyza trifolii (Burgess, 1880), Liriomyza congesta (Becker 1903), Agromyza apfelbecki Strobl, 1902 and Chromatomyia horticola (Goureau, 1851) species collected from Turkey. Türk Entomol Derg. 2006;30(4):243-53.

Rashit A, Chatterjee RN. Molecular Phylogeny by RAPD Patterns of Drosophilidae (Diptera): RAPD: A Molecular Approach to Assess the Phylogenetic Relationship of the species of Drosophilidae (Diptera). Saarbrücken, Germany: LAP Lambert Academic Publishing; 2013. 52 p.

Malviya S, Tewari RR, Agrawal UR. Genetic Relationship between the Muscids Using RAPD-PCR as marker. Int Res J Biological Sci. 2015;4(1):66-70.

Hondelmann P, Borgemeister C, Poehling H-M. Restriction fragment length polymorphisms of different DNA regions as genetic markers in the hoverfly Episyrphus balteatus (Diptera: Syrphidae). Bull Entomol Res. 2005;95(4):349-59.

Yeh FC, Yang RC, Boyle T. POPGENE Version 1.31. Microsoft Window-based Freeware for Population Genetic Analysis. Edmonton, Canada: University of Alberta; 1999. [accessed: 2016 Mar 13]. Available from: https://sites.ualberta.ca/~fyeh/popgene_download.html.

Nei M. Molecular evolutionary genetics. New York: Columbia University Press; 1987. 512 p.

Nei M. Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA. 1973;70(12):3321-3.

Shannon CE, Weaver W. The mathematical theory of communication. Urbana-Champaign: University of Illinois Press; 1949. 144 p.

Excoffier L, Laval G, Schneider S. Arlequin (version 3.0): integrated software package for population genetics data analysis. Evol Bioinform Online. 2005;1:47-50.

Pavlicek A, Hrda S, Flegr J. Free Tree - Freeware program for construction of phylogenetic trees on the basis of distance data and bootstrap/jackknife analysis of the tree robustness. Application in the RAPD analysis of the genus Frenkelia. Folia Biol. 1999;45(3):97-9.

Jaccard P. Nouvelles recherches sur la distribution florale. Bull Soc Vaud Sci Nat. 1908;44:223-70.

Page RDM. TreeView: An application to display phylogenetic trees on personal computers. Comput Appl Biosci. 1996;12(4):357-8.

Peakall R, Smouse PE. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research - an update. Bioinformatics. 2012;28(19):2537-9.

Nei M, Li WH. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA. 1979;76(10):5269-73.

Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics. 2000;155(2):945-59.

Falush D, Stephens M, Pritchard JK. Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol Ecol Notes. 2007;7(4):574-8.

Oliveira LO, Venturini BA, Rossi AAB, Hastenreiter SS. Clonal diversity and conservation genetics of the medicinal plant Carapichea ipecacuanha (Rubiaceae). Genet Mol Biol. 2010;33(1):86-93.

Pinheiro LR, Carregosa Rabbani AR, Da Silva AVC, Da Silva Ledo A, Garcia Pereira KL, Cardamone Diniz LE. Genetic diversity and population structure in the Brazilian Cattleya labiata (Orchidaceae) using RAPD and ISSR markers. Plant Syst Evol. 2012;298(10):1815-25.

Kopelman NM, Mayzel J, Jakobsson M, Rosenberg NA, Mayrose I. CLUMPAK: a program for identifying clustering modes and packaging population structure inferences across K. Mol Ecol Resour. 2015;15(5):1179-91.

Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 2005;14(8):2611-20.

Santos ARF, Ramos-Cabrer AM, Diaz-Hernandez M, Pereira-Lorenzo S. Genetic variability and diversification process in local pear cultivars from northwestern Spain using microsatellites. Tree Genet Genomes. 2011;7(5):1041-56.

Rice WR. Analyzing tables of statistical tests. Evolution. 1989;43(1):223-5.

Ståhls G, Vujić A, Petanidou T, Cardoso P, Radenković S, Ačanski J, Pérez-Bañón C, Rojo S. Phylogeographic patterns of Merodon hoverflies in the Eastern Mediterranean region: revealing connections and barriers. Ecol Evol. 2016;6(7):2226-45.

Neetu, Chaudhry S. The Genetic Structure of Anophelines (Culicidae: Diptera): RAPD Versus Allozymes. Proc Zool Soc. 2011;64(1):8-16.

Downloads

Published

2017-08-11

How to Cite

1.
Andrić A, Kočiš Tubić N, Đan M, Vujić A, Obreht Vidaković D. Assessment of genetic diversity within the Merodon ruficornis species group (Diptera: Syrphidae) by RAPD analysis. Arch Biol Sci [Internet]. 2017Aug.11 [cited 2024Nov.24];69(3):553-60. Available from: https://serbiosoc.org.rs/arch/index.php/abs/article/view/871

Issue

Section

Articles